Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015950135.1_cds_XP_016490745.1_81137
CDS Infomation

[gene=LOC107810470] [db_xref=GeneID:107810470] [protein=synaptonemal complex protein 1-like] [protein_id=XP_016490745.1] [location=join(12620..12779,12876..12925,13205..13412,13517..13642,13802..13900,14583..15259,15337..15585,15675..15803,15886..15954,16033..16143,17027..17134,17224..17334,17401..17484,18216..18305,18397..18504,18849..18935,19060..19122,19495..19596)] [gbkey=CDS]
Sequence

ATGAGTAAGCTTTTAGGATTATCAGGCATGAAAGGCCGCGATCACTTCAAATCGCTGGCC
GGAGCTGGTTTAGGAGCTGCGAAAGCCATGCCGATAACGACGCGCATGTCCGCTGACATG
GTTTCTTCTGGAAGTTTTGCGAATTTGAAGCTTACAGCAGAGAAATTGGTGAAGGAGCAA
GCTTCTGCTAAAACTGATCTGCAATTGGCGAACTCTAAATTGAAGAAGTTGATTGAAGAT
ATTCATATGCTGGAAGAAAAGTTGCAAAATGCGTACAATGAAAATGCTAAGTTGAAAGTG
AAGCAGAAAGAAGACGAGAAGCTTTGGAAAGGGCTGGAATCTAAATTTTCTTCAACAAAG
ACTTTGTGTGATCAGCTAACTGAAACTTTACAGCACCTAGCTGGTGTGGTTCAGGATGCT
GAAAAAGACAAGGCATCTTTTGAAGATAGACGATCTGCAACTTCTGTTGTTATTGATAAC
TTGCAGGACAACATTAAAGCCCTCTCTTTGAGGCTGGAATCCTCTGAAGAAACTGTTAGA
AATTGTAAAAGGGAGCTGAATGAACTCGGTATCGAGAAGGAGAAAATGGAGAACTCTTTC
AGGGTTGAACAGAGCAAAAGTATCAGTGTAATTGAGGAGAAAGATGCCACGATCAAGGAA
TTCGAAGCTACTGTAGCAGCTAATGGACTTGCAGTGGAGAATTTGAAGTCCAAGTTGGAA
GAATTACATCTCGAATCAAGATTAAAAGAAGATGAACTGGAGGACTTGAGGAATGTCAAA
AAGAATTTGGATAAAGAAAGAAGTGATTTGGTATCTAGAAATAGCAACTTTGCCAAACAA
TTAGATACATCACTTCAGGAGATAAAGAACCTTAATGAGTTTGTGAATCAAATGGTGATA
AAGTTTACTCATTTGGATAGTCAAAGTCTCGCCTTTGCGGAGAAGATAGTTCAGCTTAAT
GCTTTATTTGACGCTGGATTTGAAATGATGAGAGAGAAGGGGGAACTTGCTGCTCGGCAT
GCTCAACGAAAGTTTGACAAGCTCCAGGATCAATATACAAGCGTTATATCAGAGAAAAAT
TCTCTAAAGTTAGCTAATAAGGACTTGAAGGACAAAGTCTCTGCACTTCAGAACGAGCAG
GAATGTGCAATGGTGCAGCATGCTGAAGAATCCCGTTTAGCAGAAGATCGGATTAGAAAA
TTAGAGTCTGAAGCAGAACTGCTTCTTTCCAAGAAGATGGAGATGGAAGTGCTGATTAGC
AAGCTGCAGGAGAATGTTGTCGCTTTATCAGAAAATTCAAAACTATCGGAGAATGAAATG
CAAAATTTATTGGTGAAACTCTCTGAGATGGAAACAGATAACAAGGACCATATTGAAAAG
CTTCAATCAGACATGCAGAAAAAGGAAGATGAAATCCATATTTTACGCAAGGAAATTGAC
AAGTACACAGAAACAGTGGAATCACTGGAGAAGCATGTTGCAGAGATTAACAATAAATTG
GAGGAGAAAGATAAGCTTGTTCAGGAACTTCAGGACAGGCAGAAACAATTGGAAGCTGAG
AGAGAAAAGATTCAAGCATCTTTGCTTGCTGCTGAAAGCAACCTTGCAGAAGCTAAAAAG
CAGCATGATCAGATGTTAGAAAGCAAACAACTAGAACTTTCTAGGCATTTAAAGGAATTA
TCTCAGAAAAATGATCAGGCCATCAGTGACATCCGGAGGAAGTATGACTTGGAGAAGTTG
GAAAGTATCAATCTAGAGAAGGAGAAGGCTGAAAAAATTATTGGAGAGATGGAAAGAAAC
TGTGAGTTAAAGCTGTTGGAATACAGAGAAGAATCTAATCAGAACTTGAAGCATGTACAG
GAAGAACATGCTGCTTTGGTATGTCATATTCAACAAGAACACAGCAAGAAGGAAATGAGT
CTTGTTTCCAGTCACAATGAAGAGCTAAAACGTGTCCGACTTCAGTATGAAAATGAACTG
AGAGAAAAAACAAGTTCAATGAGGAATGAGCATGAAGCTCAGTTAAGAGCTCTGAGACTT
GAGCTTGAGGATGAATGCAGAAGACTGCAGGAGGAGTTGGATATGCTGAAGTCTAAAGAG
GAGAAACAGAGGGCTCTGTTGCAGTTGCAATGGAAAGTAATGGGAAATAATCCGGAAGAG
GAAGAAGTGACTTCAAAGAAGAAGCACTCTGGGTCATTGACCAAAAGAAACCAATCTGAT
AGTTGCAAAAAGGGCCAGCTTGCACCGGTGAGAGCTGAAGCTAAGGATGTGGATGCACAT
TATCTGGAAGGAAGTCAAACACCTGTATCAAATTTGTTGAGGAAAGTGGAGAAGGTGAAT
ACAGGAAGTGTTATTAGTATGCCCAAACATAGTAGGAAGGTGACTCATCATGAATATGAA
GTTGAAACCACAAATGGCAGAACAATCACAAAACGAAGAAAAACGAAAAGCACAGTCATG
TTTGATGATCCATCAAAGAACAAGAAGAAAAGGACACCAAAAGTGAAGACTCCCAGAGAG
GTTATCAGGAGCATTAAAGGAGGAAGTCATCCAAAACCTGCAAACATAGGTGATTTATTC
TCGGAAGGATCTCTGAATCCATATGCTGATGATCCCTATGCGTTTGGCTAG

Peptide Sequence

PEP ID

XP_016490745.1
PEP Infomation

PREDICTED: synaptonemal complex protein 1-like [Nicotiana tabacum]
Sequence

MSKLLGLSGMKGRDHFKSLAGAGLGAAKAMPITTRMSADMVSSGSFANLKLTAEKLVKEQ
ASAKTDLQLANSKLKKLIEDIHMLEEKLQNAYNENAKLKVKQKEDEKLWKGLESKFSSTK
TLCDQLTETLQHLAGVVQDAEKDKASFEDRRSATSVVIDNLQDNIKALSLRLESSEETVR
NCKRELNELGIEKEKMENSFRVEQSKSISVIEEKDATIKEFEATVAANGLAVENLKSKLE
ELHLESRLKEDELEDLRNVKKNLDKERSDLVSRNSNFAKQLDTSLQEIKNLNEFVNQMVI
KFTHLDSQSLAFAEKIVQLNALFDAGFEMMREKGELAARHAQRKFDKLQDQYTSVISEKN
SLKLANKDLKDKVSALQNEQECAMVQHAEESRLAEDRIRKLESEAELLLSKKMEMEVLIS
KLQENVVALSENSKLSENEMQNLLVKLSEMETDNKDHIEKLQSDMQKKEDEIHILRKEID
KYTETVESLEKHVAEINNKLEEKDKLVQELQDRQKQLEAEREKIQASLLAAESNLAEAKK
QHDQMLESKQLELSRHLKELSQKNDQAISDIRRKYDLEKLESINLEKEKAEKIIGEMERN
CELKLLEYREESNQNLKHVQEEHAALVCHIQQEHSKKEMSLVSSHNEELKRVRLQYENEL
REKTSSMRNEHEAQLRALRLELEDECRRLQEELDMLKSKEEKQRALLQLQWKVMGNNPEE
EEVTSKKKHSGSLTKRNQSDSCKKGQLAPVRAEAKDVDAHYLEGSQTPVSNLLRKVEKVN
TGSVISMPKHSRKVTHHEYEVETTNGRTITKRRKTKSTVMFDDPSKNKKKRTPKVKTPRE
VIRSIKGGSHPKPANIGDLFSEGSLNPYADDPYAFG

Transcript Sequence

Gene sequence data has not been registered.